PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn376501
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 205aa    MW: 23495.6 Da    PI: 9.8798
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn376501genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3696.6e-2265164196
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f kv  + +  k+ rl +pk+ a++h      +++  +s  l +ed +g++W++k++++k+s++y+lt+ W++Fvk++++ +gD+v F +++  +++l+
  Achn376501  65 FNKVV-TRSDIKQYRLAIPKHQAKKHfpphvvSSS-SNSPFLCMEDNEGKVWRFKYSFWKSSQGYMLTNEWNQFVKEKRVSVGDMVSFFRSNGADKRLF 161
                 55555.555566668**************997333.3445799*********************************************97766777777 PP

                 EEE CS
          B3  94 vkv 96 
                 + +
  Achn376501 162 IDW 164
                 765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.0E-3061168IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-2563165IPR015300DNA-binding pseudobarrel domain
CDDcd100175.49E-2163155No hitNo description
PROSITE profilePS5086311.01164167IPR003340B3 DNA binding domain
SMARTSM010191.8E-1565168IPR003340B3 DNA binding domain
PfamPF023623.5E-1966165IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MQVNDLDPLA VSGVGPHGVT ARENMQKYRH YQEPENSNRC HYCKELCNDT KKESLISLPG  60
REKLFNKVVT RSDIKQYRLA IPKHQAKKHF PPHVVSSSSN SPFLCMEDNE GKVWRFKYSF  120
WKSSQGYMLT NEWNQFVKEK RVSVGDMVSF FRSNGADKRL FIDWKPQNPS GIVAKSEPLE  180
STQNGQTVML FGVNISTNRP NNHN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-336217411124DNA-binding protein RAV1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2168822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.16e-34related to ABI3/VP1 1